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Unsupervised Deep Learning of Electronic Health Records to Characterize Heterogeneity Across Alzheimer Disease and Related Dementias: Cross-Sectional Study

Unsupervised Deep Learning of Electronic Health Records to Characterize Heterogeneity Across Alzheimer Disease and Related Dementias: Cross-Sectional Study

ADRD codes were dropped from the matrix P to not confound clustering based on structured ADRD phenotype. A schematic depicting the ICD representation pipeline is provided in Figure 1 A. Visualization of the clustering pipeline for (A) International Classification of Diseases (ICD) codes and (B) notes. For each subfigure, the workflow goes from left to right. BERT: Bidirectional Encoder Representations from Transformers. Clinical notes were encoded using Clinical BERT before clustering.

Matthew West, You Cheng, Yingnan He, Yu Leng, Colin Magdamo, Bradley T Hyman, John R Dickson, Alberto Serrano-Pozo, Deborah Blacker, Sudeshna Das

JMIR Aging 2025;8:e65178

Large Language Model Approach for Zero-Shot Information Extraction and Clustering of Japanese Radiology Reports: Algorithm Development and Validation

Large Language Model Approach for Zero-Shot Information Extraction and Clustering of Japanese Radiology Reports: Algorithm Development and Validation

The structured data were subsequently used for clustering. Flowchart of radiology reports clustering using LLM. LLM: large language model. The Med Txt-RR dataset was used in this study [5,18], comprising 135 Japanese radiology reports generated by 9 radiologists who interpreted CT images of 15 lung cancer cases sourced from Radiopaedia [19]. This dataset was used in an NTCIR-16 shared task [5], where participants competed to achieve optimal clustering performance.

Yosuke Yamagishi, Yuta Nakamura, Shouhei Hanaoka, Osamu Abe

JMIR Cancer 2025;11:e57275

Epidemiological Characteristics and Spatiotemporal Analysis of Occupational Noise–Induced Deafness From 2006 to 2022 in Guangdong, China: Surveillance Study

Epidemiological Characteristics and Spatiotemporal Analysis of Occupational Noise–Induced Deafness From 2006 to 2022 in Guangdong, China: Surveillance Study

Local spatial autocorrelation reflects the degree of correlation between each local unit and its neighboring units and is applied to identify high- and low-value clustering of local spatial locations [23]. The local indicators of spatial autocorrelation (LISA) plots were then used to identify the local clusters of ONID in Guangdong Province.

Shanyu Zhou, Yongshun Huang, Lin Chen, Xianzhong Wen, Shu Wang, Lang Huang, Xudong Li

JMIR Public Health Surveill 2024;10:e57851

Peer Review of “Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data”

Peer Review of “Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data”

It employs various time series techniques to spot such patterns using matrix profiles and multivariate clustering. The Open APS Data Commons dataset, an extensive dataset collected in real-life conditions, was analyzed to discover temporal patterns in insulin needs driven by well-known factors such as carbohydrates and potentially novel factors. The results are limited to disclosing interesting temporal patterns in insulin need that cannot be explained solely by carbohydrates through the performed analysis.

Darlinton Carvalho

JMIRx Med 2024;5:e66922

Authors’ Response to Peer Reviews of “Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data”

Authors’ Response to Peer Reviews of “Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data”

It employs various time series techniques to spot such patterns using matrix profiles and multivariate clustering. The Open APS Data Commons dataset, an extensive dataset collected in real-life conditions, was analyzed to discover temporal patterns in insulin need driven by well-known factors such as carbohydrates and potentially novel factors. The results are limited to disclosing interesting temporal patterns in insulin need that cannot be explained solely by carbohydrates through the performed analysis.

Isabella Degen, Kate Robson Brown, Henry W J Reeve, Zahraa S Abdallah

JMIRx Med 2024;5:e66643

Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data

Beyond Expected Patterns in Insulin Needs of People With Type 1 Diabetes: Temporal Analysis of Automated Insulin Delivery Data

To group similar days, we used time series k-means clustering. To prevent bias from different measurement scales, we applied min-max scaling of IOB, COB, and IG values to a range of 0 to 10 for each participant.

Isabella Degen, Kate Robson Brown, Henry W J Reeve, Zahraa S Abdallah

JMIRx Med 2024;5:e44384

Functional Impairment in Individuals Exposed to Violence Based on Electronical Forensic Medical Record Mining and Their Profile Identification: Controlled Observational Study

Functional Impairment in Individuals Exposed to Violence Based on Electronical Forensic Medical Record Mining and Their Profile Identification: Controlled Observational Study

We used a clustering algorithm [19] to identify homogeneous profiles of situations involving violence. The Partitioning Around Medoids [20] algorithm was used to automatically detect groups or clusters of similar patients, provided the desired number of groups was specified. We applied the consensus clustering framework [21] to determine the optimal number of clusters. Finally, we investigated the clinical characteristics underlying each violent situation profile.

Ivan Lerner, Patrick Chariot, Thomas Lefèvre

JMIR Public Health Surveill 2024;10:e43563

Constructing a Hospital Department Development–Level Assessment Model: Machine Learning and Expert Consultation Approach in Complex Hospital Data Environments

Constructing a Hospital Department Development–Level Assessment Model: Machine Learning and Expert Consultation Approach in Complex Hospital Data Environments

Consensus clustering is a common clustering method used in machine learning algorithms. It uses repeated sampling to draw a certain sample for the data set, specifies the number of k clusters, and calculates the rationality under different numbers of clusters. The k means algorithm is a widely used clustering analysis algorithm that is simple, efficient, and can make the clustering results locally optimal [4].

Jingkun Liu, Jiaojiao Tai, Junying Han, Meng Zhang, Yang Li, Hongjuan Yang, Ziqiang Yan

JMIR Form Res 2024;8:e54638